Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044720.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8044722.1 | |
| CAI8044723.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8044724.1 | |
| CAI8044725.1 | |
| CAI8044726.1 | SUPPRESSOR OF TY 5 |
| CAI8044727.1 | SUPPRESSOR OF TY 5 |
| CAI8044728.1 | SUPPRESSOR OF TY 5 |
| CAI8044733.1 | |
| CAI8044731.1 | |
| CAI8044729.1 | |
| CAI8044730.1 | |
| CAI8044732.1 | |
| CAI8044734.1 | |
| CAI8044736.1 | |
| CAI8044735.1 | |
| CAI8044737.1 | |
| CAI8044738.1 | |
| CAI8044739.1 | UNCHARACTERIZED |
| CAI8044740.1 | UNCHARACTERIZED |
| CAI8044742.1 | PLATELET-DERIVED GROWTH FACTOR RECEPTOR LIKE |
| CAI8044741.1 | |
| CAI8044746.1 | VASCULAR CELL ADHESION MOLECULE 1 |
| CAI8044745.1 | VASCULAR CELL ADHESION MOLECULE 1 |
| CAI8044744.1 | VASCULAR CELL ADHESION MOLECULE 1 |
| CAI8044743.1 | |
| CAI8044747.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8044748.1 | VASCULAR CELL ADHESION MOLECULE 1 |
| CAI8044749.1 | |
| CAI8044750.1 | |
| CAI8044751.1 | |
| CAI8044752.1 | |
| CAI8044753.1 | |
| CAI8044754.1 | PORCUPINE |
| CAI8044755.1 | PORCUPINE |
| CAI8044756.1 | PORCUPINE |
| CAI8044757.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8044758.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8044759.1 | |
| CAI8044760.1 | TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED |
| CAI8044761.1 | |
| CAI8044763.1 | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE |
| CAI8044762.1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 |
| CAI8044764.1 | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE |
| CAI8044766.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER |
| CAI8044765.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER |
| CAI8044767.1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER |
| CAI8044768.1 | |
| CAI8044774.1 | NECTIN-RELATED |
| CAI8044773.1 | NECTIN-RELATED |
