Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044419.1 | ZGC:172121 |
| CAI8044423.1 | ZGC:172121 |
| CAI8044422.1 | |
| CAI8044426.1 | ZGC:172121 |
| CAI8044425.1 | ZGC:172121 |
| CAI8044424.1 | ZGC:172121 |
| CAI8044427.1 | ZGC:172121 |
| CAI8044428.1 | ZGC:172121 |
| CAI8044429.1 | ZGC:172121 |
| CAI8044430.1 | ZGC:172121 |
| CAI8044431.1 | |
| CAI8044434.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8044432.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8044433.1 | S-ADENOSYLMETHIONINE SYNTHETASE |
| CAI8044435.1 | |
| CAI8044436.1 | |
| CAI8044438.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8044437.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8044439.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8044440.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8044441.1 | |
| CAI8044442.1 | CELL DIVISION CYCLE 16,23,27 |
| CAI8044443.1 | SLL1084 PROTEIN |
| CAI8044444.1 | CELL DIVISION PROTEIN FTSA-RELATED |
| CAI8044445.1 | UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED |
| CAI8044446.1 | UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE |
| CAI8044447.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8044448.1 | |
| CAI8044449.1 | |
| CAI8044450.1 | |
| CAI8044451.1 | |
| CAI8044452.1 | |
| CAI8044453.1 | |
| CAI8044455.1 | |
| CAI8044454.1 | |
| CAI8044456.1 | |
| CAI8044457.1 | |
| CAI8044458.1 | |
| CAI8044459.1 | |
| CAI8044461.1 | POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP |
| CAI8044460.1 | POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP |
| CAI8044463.1 | SELENIDE, WATER DIKINASE |
| CAI8044464.1 | SELENIDE, WATER DIKINASE |
| CAI8044462.1 | SELENIDE, WATER DIKINASE |
| CAI8044465.1 | |
| CAI8044467.1 | CYTOKINE RECEPTOR |
| CAI8044466.1 | |
| CAI8044469.1 | |
| CAI8044468.1 | |
| CAI8044470.1 |
