Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044522.1 | |
| CAI8044523.1 | |
| CAI8044521.1 | |
| CAI8044524.1 | |
| CAI8044525.1 | CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1 |
| CAI8044526.1 | RAB FAMILY |
| CAI8044527.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8044533.1 | |
| CAI8044531.1 | CARBONIC ANHYDRASE |
| CAI8044530.1 | |
| CAI8044529.1 | |
| CAI8044532.1 | CARBONIC ANHYDRASE |
| CAI8044528.1 | |
| CAI8044534.1 | |
| CAI8044538.1 | CASEIN KINASE-RELATED |
| CAI8044537.1 | CASEIN KINASE-RELATED |
| CAI8044536.1 | CASEIN KINASE-RELATED |
| CAI8044535.1 | CASEIN KINASE-RELATED |
| CAI8044539.1 | CASEIN KINASE-RELATED |
| CAI8044540.1 | |
| CAI8044544.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044542.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044541.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044543.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044547.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044548.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044545.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044546.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044549.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044550.1 | COPROPORPHYRINIGEN III OXIDASE |
| CAI8044551.1 | RIBONUCLEIC ACID BINDING PROTEIN S1 |
| CAI8044554.1 | |
| CAI8044553.1 | |
| CAI8044555.1 | |
| CAI8044552.1 | |
| CAI8044557.1 | |
| CAI8044556.1 | |
| CAI8044558.1 | - |
| CAI8044559.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8044560.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8044561.1 | |
| CAI8044562.1 | |
| CAI8044563.1 | |
| CAI8044564.1 | |
| CAI8044565.1 | |
| CAI8044571.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER |
| CAI8044570.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER |
| CAI8044572.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER |
| CAI8044569.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER |
| CAI8044568.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER |
