Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044221.1 | SORTING NEXIN FAMILY MEMBER |
| CAI8044220.1 | SORTING NEXIN FAMILY MEMBER |
| CAI8044224.1 | SORTING NEXIN FAMILY MEMBER |
| CAI8044225.1 | |
| CAI8044223.1 | SORTING NEXIN FAMILY MEMBER |
| CAI8044226.1 | |
| CAI8044227.1 | |
| CAI8044228.1 | ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK |
| CAI8044229.1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| CAI8044231.1 | |
| CAI8044230.1 | |
| CAI8044232.1 | FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED |
| CAI8044233.1 | SLR1143 PROTEIN |
| CAI8044234.1 | FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED |
| CAI8044235.1 | |
| CAI8044236.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S25 |
| CAI8044237.1 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
| CAI8044238.1 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
| CAI8044239.1 | |
| CAI8044240.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 2 |
| CAI8044241.1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8044242.1 | |
| CAI8044243.1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8044244.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
| CAI8044245.1 | SHORT COILED COIL PROTEIN |
| CAI8044246.1 | 26S PROTESOME SUBUNIT 6 |
| CAI8044248.1 | PROTEIN SSUH2 HOMOLOG |
| CAI8044247.1 | PROTEIN SSUH2 HOMOLOG |
| CAI8044249.1 | PROTEIN SSUH2 HOMOLOG |
| CAI8044253.1 | |
| CAI8044252.1 | |
| CAI8044255.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8044254.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8044251.1 | |
| CAI8044250.1 | |
| CAI8044256.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8044257.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8044258.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8044259.1 | DEHYDROGENASE RELATED |
| CAI8044262.1 | DNA LIGASE |
| CAI8044261.1 | DNA LIGASE |
| CAI8044260.1 | SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN |
| CAI8044263.1 | DNA LIGASE |
| CAI8044264.1 | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED |
| CAI8044265.1 | GAMMA TUBULIN COMPLEX PROTEIN |
| CAI8044266.1 | |
| CAI8044267.1 | GAMMA TUBULIN COMPLEX PROTEIN |
| CAI8044268.1 | GAMMA TUBULIN COMPLEX PROTEIN |
| CAI8044269.1 | |
| CAI8044271.1 | GLUTAMATE SEMIALDEHYDE DEHYDROGENASE |
