Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043971.1 | - |
| CAI8043972.1 | - |
| CAI8043973.1 | CYCLIN |
| CAI8043974.1 | |
| CAI8043975.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8043976.1 | SERINE/THREONINE-PROTEIN KINASE PLK |
| CAI8043977.1 | |
| CAI8043981.1 | HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED |
| CAI8043980.1 | HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED |
| CAI8043979.1 | HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED |
| CAI8043978.1 | HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED |
| CAI8043982.1 | |
| CAI8043983.1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22 |
| CAI8043984.1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT X |
| CAI8043986.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8043985.1 | |
| CAI8043987.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8043989.1 | UPF0183 PROTEIN |
| CAI8043988.1 | UPF0183 PROTEIN |
| CAI8043990.1 | UPF0183 PROTEIN |
| CAI8043991.1 | UPF0183 PROTEIN |
| CAI8043992.1 | UPF0183 PROTEIN |
| CAI8043993.1 | |
| CAI8043994.1 | DCTP PYROPHOSPHATASE 1 |
| CAI8043997.1 | |
| CAI8043996.1 | |
| CAI8043995.1 | |
| CAI8043998.1 | |
| CAI8044000.1 | |
| CAI8043999.1 | |
| CAI8044001.1 | |
| CAI8044002.1 | |
| CAI8044004.1 | MDM2-BINDING PROTEIN |
| CAI8044003.1 | |
| CAI8044005.1 | MDM2-BINDING PROTEIN |
| CAI8044007.1 | SH3 MULTIPLE DOMAIN |
| CAI8044006.1 | |
| CAI8044011.1 | SH3 MULTIPLE DOMAIN |
| CAI8044012.1 | SH3 MULTIPLE DOMAIN |
| CAI8044010.1 | SH3 MULTIPLE DOMAIN |
| CAI8044009.1 | SH3 MULTIPLE DOMAIN |
| CAI8044008.1 | |
| CAI8044013.1 | SH3 MULTIPLE DOMAIN |
| CAI8044014.1 | SH3 MULTIPLE DOMAIN |
| CAI8044015.1 | SH3 MULTIPLE DOMAIN |
| CAI8044016.1 | |
| CAI8044018.1 | SH3 MULTIPLE DOMAIN |
| CAI8044017.1 | SH3 MULTIPLE DOMAIN |
| CAI8044019.1 | XPA-BINDING PROTEIN 1-RELATED |
| CAI8044020.1 |
