Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043670.1 | |
| CAI8043673.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI8043672.1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| CAI8043674.1 | BONUS, ISOFORM C-RELATED |
| CAI8043675.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8043678.1 | |
| CAI8043677.1 | |
| CAI8043676.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8043680.1 | |
| CAI8043679.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8043681.1 | |
| CAI8043682.1 | |
| CAI8043683.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8043685.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8043684.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8043686.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| CAI8043688.1 | PROTEIN LIN-7 HOMOLOG |
| CAI8043687.1 | PROTEIN LIN-7 HOMOLOG |
| CAI8043689.1 | |
| CAI8043690.1 | |
| CAI8043691.1 | |
| CAI8043693.1 | OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR |
| CAI8043692.1 | OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR |
| CAI8043694.1 | OPIOID GROWTH FACTOR RECEPTOR OGFR ZETA-TYPE OPIOID RECEPTOR |
| CAI8043695.1 | |
| CAI8043698.1 | LD44762P |
| CAI8043697.1 | LD44762P |
| CAI8043696.1 | |
| CAI8043699.1 | LD44762P |
| CAI8043700.1 | LD44762P |
| CAI8043701.1 | |
| CAI8043702.1 | |
| CAI8043703.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8043704.1 | |
| CAI8043705.1 | 3-KETOACYL-COA THIOLASE, PEROXISOMAL |
| CAI8043706.1 | 3-KETOACYL-COA THIOLASE, PEROXISOMAL |
| CAI8043707.1 | |
| CAI8043708.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8043709.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8043710.1 | 1,2-DIOXYGENASE PROTEIN-RELATED |
| CAI8043711.1 | |
| CAI8043712.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8043713.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8043714.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8043715.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8043716.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8043717.1 | METHYLTRANSFERASE |
| CAI8043718.1 | UNCHARACTERIZED NUCLEAR HORMONE RECEPTOR-RELATED |
| CAI8043719.1 | CYSTEINE DESULFURASE |
| CAI8043720.1 | PHOSPHOTRIESTERASE-RELATED |
