Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043821.1 | REPLICATIVE DNA HELICASE DNAB |
| CAI8043822.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8043823.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8043824.1 | BIOTIN SYNTHASE |
| CAI8043825.1 | BIOTIN SYNTHASE |
| CAI8043826.1 | BIOTIN SYNTHASE |
| CAI8043827.1 | ACYL-COENZYME A THIOESTERASE PAAI |
| CAI8043828.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI8043829.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8043830.1 | 2,4-DIENOYL-COA REDUCTASE |
| CAI8043831.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8043832.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8043833.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8043835.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8043834.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8043836.1 | 5-OXOPROLINASE RELATED |
| CAI8043837.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8043838.1 | ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH] |
| CAI8043839.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8043840.1 | MALATE SYNTHASE G |
| CAI8043841.1 | MONOOXYGENASE |
| CAI8043842.1 | AMINOTRANSFERASE CLASS V |
| CAI8043843.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8043844.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8043845.1 | |
| CAI8043847.1 | BASIGIN RELATED |
| CAI8043846.1 | |
| CAI8043848.1 | BASIGIN RELATED |
| CAI8043851.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8043850.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8043849.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8043853.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8043852.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8043854.1 | |
| CAI8043855.1 | |
| CAI8043856.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8043857.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8043858.1 | |
| CAI8043859.1 | |
| CAI8043860.1 | |
| CAI8043861.1 | |
| CAI8043862.1 | |
| CAI8043863.1 | |
| CAI8043865.1 | |
| CAI8043864.1 | |
| CAI8043866.1 | |
| CAI8043867.1 | |
| CAI8043868.1 | |
| CAI8043870.1 | |
| CAI8043869.1 |
