Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043521.1 | TRANSMEMBRANE PROTEIN 256 |
| CAI8043522.1 | |
| CAI8043523.1 | |
| CAI8043524.1 | |
| CAI8043525.1 | ALPHA-2-MACROGLOBULIN HOMOLOG |
| CAI8043526.1 | |
| CAI8043527.1 | |
| CAI8043528.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8043529.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8043530.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8043531.1 | RNA POLYMERASE ECF-TYPE SIGMA FACTO |
| CAI8043532.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8043533.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
| CAI8043534.1 | |
| CAI8043535.1 | BETA-LACTAMASE-RELATED |
| CAI8043536.1 | |
| CAI8043537.1 | SUGAR KINASE |
| CAI8043538.1 | SULFITE REDUCTASE |
| CAI8043539.1 | SLR6095 PROTEIN |
| CAI8043540.1 | ISOMERASE |
| CAI8043541.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8043542.1 | |
| CAI8043543.1 | |
| CAI8043544.1 | CRISPR-ASSOCIATED ENDORIBONUCLEASE CAS2 |
| CAI8043545.1 | |
| CAI8043546.1 | |
| CAI8043547.1 | |
| CAI8043548.1 | |
| CAI8043549.1 | |
| CAI8043553.1 | |
| CAI8043552.1 | |
| CAI8043550.1 | |
| CAI8043551.1 | |
| CAI8043555.1 | |
| CAI8043554.1 | |
| CAI8043556.1 | |
| CAI8043558.1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| CAI8043559.1 | |
| CAI8043557.1 | |
| CAI8043560.1 | |
| CAI8043561.1 | |
| CAI8043562.1 | |
| CAI8043563.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8043565.1 | PHD FINGER PROTEIN |
| CAI8043564.1 | PHD FINGER PROTEIN |
| CAI8043566.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI8043567.1 | SORTING NEXIN |
| CAI8043568.1 | ARCHEASE |
| CAI8043569.1 | |
| CAI8043570.1 | GLYCOSYL HYDROLASE-RELATED |
