Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043321.1 | |
| CAI8043322.1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| CAI8043324.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8043323.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8043325.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8043326.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8043327.1 | |
| CAI8043328.1 | EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED |
| CAI8043334.1 | |
| CAI8043333.1 | |
| CAI8043332.1 | |
| CAI8043331.1 | |
| CAI8043330.1 | |
| CAI8043329.1 | |
| CAI8043336.1 | |
| CAI8043335.1 | |
| CAI8043337.1 | |
| CAI8043339.1 | |
| CAI8043338.1 | |
| CAI8043340.1 | |
| CAI8043346.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043344.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043345.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043343.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043342.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043341.1 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
| CAI8043349.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043347.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043348.1 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
| CAI8043350.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043351.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI8043352.1 | |
| CAI8043353.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8043354.1 | |
| CAI8043355.1 | KYNURENINE 3-MONOOXYGENASE |
| CAI8043356.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8043357.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8043358.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| CAI8043359.1 | |
| CAI8043360.1 | |
| CAI8043361.1 | |
| CAI8043362.1 | |
| CAI8043363.1 | |
| CAI8043365.1 | BAX INHIBITOR-RELATED |
| CAI8043364.1 | BAX INHIBITOR-RELATED |
| CAI8043366.1 | |
| CAI8043367.1 | |
| CAI8043369.1 | MYOTROPHIN |
| CAI8043370.1 | - |
| CAI8043368.1 |
