Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8043071.1 | EXONUCLEASE-LIKE PROTEIN |
| CAI8043072.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8043073.1 | |
| CAI8043074.1 | |
| CAI8043075.1 | |
| CAI8043076.1 | - |
| CAI8043077.1 | |
| CAI8043078.1 | |
| CAI8043079.1 | |
| CAI8043081.1 | |
| CAI8043080.1 | |
| CAI8043082.1 | |
| CAI8043083.1 | |
| CAI8043084.1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
| CAI8043085.1 | RADICAL SAM DOMAIN PROTEIN |
| CAI8043086.1 | PROTEIN YEEZ |
| CAI8043087.1 | TERPENE CYCLASE/MUTASE FAMILY MEMBER |
| CAI8043088.1 | UNCHARACTERIZED PROTEIN YJBQ-RELATED |
| CAI8043089.1 | BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE |
| CAI8043090.1 | INOSINE-URIDINE PREFERRING NUCLEOSIDE HYDROLASE |
| CAI8043091.1 | |
| CAI8043094.1 | CITRATE SYNTHASE |
| CAI8043093.1 | CITRATE SYNTHASE |
| CAI8043092.1 | CITRATE SYNTHASE |
| CAI8043100.1 | |
| CAI8043095.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8043096.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8043097.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8043098.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8043099.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8043101.1 | |
| CAI8043102.1 | |
| CAI8043103.1 | |
| CAI8043104.1 | |
| CAI8043105.1 | |
| CAI8043106.1 | |
| CAI8043107.1 | UNCHARACTERIZED |
| CAI8043111.1 | |
| CAI8043110.1 | |
| CAI8043109.1 | |
| CAI8043108.1 | |
| CAI8043112.1 | |
| CAI8043113.1 | |
| CAI8043114.1 | |
| CAI8043115.1 | |
| CAI8043116.1 | |
| CAI8043117.1 | |
| CAI8043118.1 | RETINOBLASTOMA-BINDING PROTEIN 5 |
| CAI8043119.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8043120.1 | TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 |
