Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042921.1 | - |
| CAI8042922.1 | CORRINOID ADENOSYLTRANSFERASE |
| CAI8042923.1 | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISH |
| CAI8042924.1 | 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO)METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE |
| CAI8042925.1 | |
| CAI8042926.1 | DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT |
| CAI8042927.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8042928.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8042929.1 | |
| CAI8042930.1 | MEMBRANE PROTEIN-RELATED |
| CAI8042931.1 | RIBOSOMAL PROTEIN L27 |
| CAI8042933.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8042932.1 | |
| CAI8042934.1 | |
| CAI8042935.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8042936.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8042938.1 | |
| CAI8042937.1 | |
| CAI8042939.1 | E3 UBIQUITIN-PROTEIN LIGASE UBR5 |
| CAI8042940.1 | |
| CAI8042941.1 | |
| CAI8042942.1 | SEC31-RELATED PROTEIN |
| CAI8042943.1 | |
| CAI8042944.1 | TWO PORE CALCIUM CHANNEL PROTEIN 1 |
| CAI8042945.1 | |
| CAI8042947.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8042946.1 | OXYSTEROL-BINDING PROTEIN-RELATED |
| CAI8042948.1 | |
| CAI8042949.1 | DJ-1 PROTEIN |
| CAI8042950.1 | |
| CAI8042951.1 | |
| CAI8042952.1 | CYCLIN |
| CAI8042953.1 | CYCLIN |
| CAI8042954.1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 4 |
| CAI8042955.1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 4 |
| CAI8042958.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8042959.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8042957.1 | GUANYLYL CYCLASE |
| CAI8042956.1 | |
| CAI8042961.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8042962.1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| CAI8042960.1 | GUANYLYL CYCLASE |
| CAI8042965.1 | FOLLICULIN FAMILY MEMBER |
| CAI8042964.1 | FOLLICULIN FAMILY MEMBER |
| CAI8042963.1 | FOLLICULIN FAMILY MEMBER |
| CAI8042966.1 | FOLLICULIN FAMILY MEMBER |
| CAI8042967.1 | |
| CAI8042969.1 | SEC14 RELATED PROTEIN |
| CAI8042968.1 | SEC14 RELATED PROTEIN |
| CAI8042970.1 | SEC14 RELATED PROTEIN |
