About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8042671.1
CAI8042672.1ENOYL-COA HYDRATASE
CAI8042673.1
CAI8042674.1ENOYL-COA HYDRATASE
CAI8042675.1PHOSPHOSERINE PHOSPHATASE
CAI8042676.1DEHYDROGENASES, SHORT CHAIN
CAI8042677.1METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE
CAI8042678.1
CAI8042680.1SUBGROUP IIII AMINOTRANSFERASE
CAI8042679.1SUBGROUP IIII AMINOTRANSFERASE
CAI8042681.1THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED
CAI8042682.1SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA
CAI8042683.1ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
CAI8042684.1ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
CAI8042685.1DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED
CAI8042686.1
CAI8042687.1DNA HELICASE RECQ FAMILY MEMBER
CAI8042690.1EBNA2 BINDING PROTEIN P100
CAI8042689.1EBNA2 BINDING PROTEIN P100
CAI8042688.1EBNA2 BINDING PROTEIN P100
CAI8042692.1EBNA2 BINDING PROTEIN P100
CAI8042691.1EBNA2 BINDING PROTEIN P100
CAI8042693.1EBNA2 BINDING PROTEIN P100
CAI8042694.1
CAI8042696.1SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES
CAI8042697.1SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES
CAI8042698.1SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES
CAI8042695.1SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES
CAI8042699.1
CAI8042700.1
CAI8042701.1SUCCINYL-COA LIGASE SUBUNIT ALPHA
CAI8042702.1SUCCINYL-COA SYNTHETASE BETA CHAIN
CAI8042703.1PHOSPHORIBOSYLAMINE--GLYCINE LIGASE
CAI8042704.1C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED
CAI8042706.1PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
CAI8042705.1PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
CAI8042707.1UVRABC SYSTEM PROTEIN A
CAI8042708.1UVRABC SYSTEM PROTEIN B
CAI8042709.15-NITROIMIDAZOLE ANTIBIOTICS RESISTANCE PROTEIN, NIMA-FAMILY-RELATED PROTEIN-RELATED
CAI8042715.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8042713.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8042711.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8042712.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8042714.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8042710.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8042716.13-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED
CAI8042717.13-ISOPROPYLMALATE DEHYDRATASE SMALL SUBUNIT 2-RELATED-RELATED
CAI8042720.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8042719.1HOMOACONITASE, MITOCHONDRIAL-RELATED
CAI8042718.1HOMOACONITASE, MITOCHONDRIAL-RELATED
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