Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042470.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042469.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042473.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042474.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042475.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042476.1 | STEROL ISOMERASE |
| CAI8042477.1 | DOPAMINE BETA HYDROXYLASE RELATED |
| CAI8042479.1 | |
| CAI8042478.1 | |
| CAI8042480.1 | |
| CAI8042482.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8042484.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8042485.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8042483.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8042481.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8042486.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8042487.1 | |
| CAI8042488.1 | |
| CAI8042489.1 | |
| CAI8042490.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8042493.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 24 |
| CAI8042491.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 24 |
| CAI8042492.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 24 |
| CAI8042494.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 24 |
| CAI8042495.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 24 |
| CAI8042496.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 24 |
| CAI8042497.1 | |
| CAI8042498.1 | |
| CAI8042499.1 | |
| CAI8042500.1 | |
| CAI8042503.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8042502.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8042501.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8042504.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8042505.1 | GUANYLATE KINASE-RELATED |
| CAI8042506.1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 2 |
| CAI8042507.1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 2 |
| CAI8042509.1 | |
| CAI8042510.1 | |
| CAI8042508.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8042511.1 | GLYCOSYL TRANSFERASE-RELATED |
| CAI8042512.1 | HEMIN IMPORT ATP-BINDING PROTEIN HMUV |
| CAI8042513.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8042514.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8042515.1 | 2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE |
| CAI8042516.1 | 2-AMINOMUCONIC SEMIALDEHYDE DEHYDROGENASE |
| CAI8042517.1 | |
| CAI8042518.1 | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL |
| CAI8042519.1 | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL |
| CAI8042520.1 | SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL |
