Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042175.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8042174.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8042173.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8042172.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8042171.1 | ARGINYL-TRNA SYNTHETASE |
| CAI8042176.1 | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 |
| CAI8042177.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8042178.1 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
| CAI8042179.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8042180.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8042181.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8042182.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8042183.1 | MOXR FAMILY PROTEIN |
| CAI8042184.1 | S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME |
| CAI8042185.1 | ARGINASE/AGMATINASE |
| CAI8042186.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8042187.1 | |
| CAI8042188.1 | |
| CAI8042189.1 | |
| CAI8042190.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8042191.1 | |
| CAI8042192.1 | |
| CAI8042193.1 | LACTATE UTILIZATION PROTEIN B |
| CAI8042194.1 | LACTATE UTILIZATION PROTEIN C |
| CAI8042195.1 | GLYCERATE KINASE |
| CAI8042196.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8042197.1 | UVRC/OXIDOREDUCTASE |
| CAI8042198.1 | |
| CAI8042199.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8042200.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
| CAI8042201.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI8042202.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8042203.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8042204.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8042205.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8042206.1 | |
| CAI8042207.1 | |
| CAI8042208.1 | |
| CAI8042209.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8042210.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8042211.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8042212.1 | |
| CAI8042213.1 | |
| CAI8042215.1 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED |
| CAI8042214.1 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED |
| CAI8042216.1 | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED |
| CAI8042217.1 | |
| CAI8042218.1 | |
| CAI8042219.1 | |
| CAI8042220.1 |
