Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8042121.1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
| CAI8042122.1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
| CAI8042123.1 | |
| CAI8042124.1 | |
| CAI8042125.1 | |
| CAI8042126.1 | |
| CAI8042128.1 | MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK |
| CAI8042127.1 | |
| CAI8042129.1 | MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK |
| CAI8042130.1 | MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK |
| CAI8042131.1 | MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK |
| CAI8042132.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8042133.1 | RE64534P |
| CAI8042134.1 | |
| CAI8042135.1 | |
| CAI8042136.1 | TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1081 |
| CAI8042137.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8042138.1 | SHORT-CHAIN DEHYDROGENASE REDUCTASE |
| CAI8042139.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8042140.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8042141.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8042142.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8042143.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8042144.1 | |
| CAI8042145.1 | |
| CAI8042148.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8042147.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8042146.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8042149.1 | PROSTAGLANDIN REDUCTASE |
| CAI8042150.1 | PROSTAGLANDIN REDUCTASE |
| CAI8042151.1 | PROSTAGLANDIN REDUCTASE |
| CAI8042152.1 | PROSTAGLANDIN REDUCTASE |
| CAI8042153.1 | OXALATE-BINDING PROTEIN |
| CAI8042154.1 | H2HPP ISOMERASE |
| CAI8042155.1 | SULFATE TRANSPORTER |
| CAI8042156.1 | SULFATE TRANSPORTER |
| CAI8042158.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI8042157.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI8042162.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI8042159.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI8042160.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI8042161.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI8042163.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8042164.1 | NUCLEOSIDE-DIPHOSPHATE-SUGAR EPIMERASE |
| CAI8042165.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI8042166.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| CAI8042167.1 | D-THREO-ALDOSE 1-DEHYDROGENASE |
| CAI8042168.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI8042169.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI8042170.1 | DYNACTIN SUBUNIT P25 |
