Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041921.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8041925.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI8041923.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI8041922.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI8041924.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI8041926.1 | SNF2/RAD54 HELICASE FAMILY |
| CAI8041928.1 | |
| CAI8041927.1 | |
| CAI8041929.1 | |
| CAI8041930.1 | |
| CAI8041931.1 | - |
| CAI8041932.1 | |
| CAI8041933.1 | ATP-DEPENDENT DNA HELICASE |
| CAI8041934.1 | |
| CAI8041935.1 | |
| CAI8041936.1 | |
| CAI8041937.1 | |
| CAI8041938.1 | WD REPEAT-CONTAINING PROTEIN 61 |
| CAI8041939.1 | C2 DOMAIN-CONTAINING PROTEIN |
| CAI8041941.1 | |
| CAI8041940.1 | |
| CAI8041944.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041945.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041943.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041942.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041946.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041949.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041948.1 | |
| CAI8041947.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041950.1 | |
| CAI8041951.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8041952.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8041953.1 | ABC TRANSPORTER, ATP-BINDING PROTEIN |
| CAI8041954.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8041955.1 | PHYTANOYL-COA DIOXYGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_2G15850) |
| CAI8041956.1 | LD18447P |
| CAI8041957.1 | HEMK METHYLTRANSFERASE |
| CAI8041958.1 | |
| CAI8041959.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8041960.1 | PSEUDOURIDYLATE SYNTHASE |
| CAI8041961.1 | PROTEIN SMF |
| CAI8041962.1 | |
| CAI8041963.1 | TPR REPEAT-CONTAINING PROTEIN PA4667 |
| CAI8041964.1 | TPR REPEAT-CONTAINING PROTEIN PA4667 |
| CAI8041965.1 | |
| CAI8041966.1 | |
| CAI8041967.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8041968.1 | |
| CAI8041969.1 | ZGC:162816-RELATED |
| CAI8041970.1 |
