Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041871.1 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
| CAI8041877.1 | |
| CAI8041875.1 | |
| CAI8041872.1 | |
| CAI8041874.1 | |
| CAI8041873.1 | |
| CAI8041876.1 | |
| CAI8041878.1 | |
| CAI8041879.1 | SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1 |
| CAI8041880.1 | |
| CAI8041881.1 | E3 UBIQUITIN-PROTEIN LIGASE ATL42 |
| CAI8041883.1 | |
| CAI8041882.1 | |
| CAI8041884.1 | |
| CAI8041885.1 | ABC TRANSPORTER, ATP-BINDING PROTEIN |
| CAI8041886.1 | EXPRESSED PROTEIN |
| CAI8041887.1 | ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE |
| CAI8041888.1 | METALLOPHOSPHOESTERASE |
| CAI8041889.1 | HEN1 |
| CAI8041890.1 | |
| CAI8041891.1 | |
| CAI8041892.1 | PHOSPHOMETHYLPYRIMIDINE KINASE |
| CAI8041893.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8041894.1 | |
| CAI8041897.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041896.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041895.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041898.1 | |
| CAI8041899.1 | |
| CAI8041900.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8041901.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI8041902.1 | ENDORIBONUCLEASE-RELATED |
| CAI8041903.1 | BCDNA.GH03377 |
| CAI8041904.1 | |
| CAI8041905.1 | |
| CAI8041906.1 | |
| CAI8041907.1 | |
| CAI8041908.1 | POLYSACCHARIDE DEACETYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G05030) |
| CAI8041909.1 | POLYSACCHARIDE DEACETYLASE-RELATED |
| CAI8041910.1 | POLYSACCHARIDE DEACETYLASE-RELATED |
| CAI8041911.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041912.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8041913.1 | |
| CAI8041914.1 | AAA-FAMILY ATPASE |
| CAI8041917.1 | LIM DOMAIN KINASE 1 |
| CAI8041916.1 | LIM DOMAIN KINASE 1 |
| CAI8041918.1 | LIM DOMAIN KINASE 1 |
| CAI8041915.1 | LIM DOMAIN KINASE 1 |
| CAI8041919.1 | |
| CAI8041920.1 |
