About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8042021.1
CAI8042020.1
CAI8042023.1SEPTUM SITE-DETERMINING PROTEIN MIND HOMOLOG, CHLOROPLASTIC-RELATED
CAI8042024.1LAR_N DOMAIN-CONTAINING PROTEIN
CAI8042025.1GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2
CAI8042026.1GLUCOSE INHIBITED DIVISION PROTEIN A
CAI8042027.1GLUCOSE INHIBITED DIVISION PROTEIN A
CAI8042028.1GLUCOSE INHIBITED DIVISION PROTEIN A
CAI8042029.1DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED
CAI8042030.1ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
CAI8042031.1ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL
CAI8042032.1D-GALACTONATE DEHYDRATASE-RELATED
CAI8042033.1D-GALACTONATE DEHYDRATASE-RELATED
CAI8042034.1
CAI8042036.1
CAI8042035.1
CAI8042037.1AARF DOMAIN CONTAINING KINASE 2 (PREDICTED)
CAI8042038.1SLR5058 PROTEIN
CAI8042039.1SLR5058 PROTEIN
CAI8042040.1LEUCYL-TRNA SYNTHETASE
CAI8042042.1LEUCYL-TRNA SYNTHETASE
CAI8042041.1LEUCYL-TRNA SYNTHETASE
CAI8042043.1
CAI8042044.1
CAI8042045.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
CAI8042046.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
CAI8042047.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
CAI8042048.1GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
CAI8042049.1GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
CAI8042050.1ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI
CAI8042051.1
CAI8042055.1HCLS1-BINDING PROTEIN 3
CAI8042053.1
CAI8042052.1
CAI8042056.1HCLS1-BINDING PROTEIN 3
CAI8042054.1
CAI8042057.1CYTIDYLATE KINASE/PANTOATE-BETA-ALANINE LIGASE
CAI8042058.1
CAI8042059.1DEHYDROGENASES, SHORT CHAIN
CAI8042061.1DEHYDROGENASES, SHORT CHAIN
CAI8042060.1DEHYDROGENASES, SHORT CHAIN
CAI8042062.1MONOACYLGLYCEROL LIPASE
CAI8042063.1
CAI8042064.1HEME A SYNTHASE
CAI8042065.1PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL
CAI8042066.1CYTOCHROME C OXIDASE, SUBUNIT II
CAI8042067.1
CAI8042068.1BAX INHIBITOR-RELATED
CAI8042069.1
CAI8042070.1
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