Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041821.1 | RIBOSOME MATURATION FACTOR RIMM |
| CAI8041822.1 | 30S RIBOSOMAL PROTEIN S16 |
| CAI8041824.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8041823.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8041825.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8041826.1 | PROTEASE HTPX |
| CAI8041828.1 | PROTEASE HTPX |
| CAI8041827.1 | PROTEASE HTPX |
| CAI8041829.1 | HIGH-AFFINITY ZINC UPTAKE SYSTEM PROTEIN ZNUA-RELATED |
| CAI8041830.1 | ABC-TRANSPORTER METAL-BINDING PROTEIN |
| CAI8041832.1 | |
| CAI8041831.1 | |
| CAI8041833.1 | TYROSINASE FAMILY MEMBER |
| CAI8041834.1 | |
| CAI8041835.1 | |
| CAI8041836.1 | |
| CAI8041837.1 | TRANSMEMBRANE PROTEIN 232 |
| CAI8041839.1 | GABA-B RECEPTOR |
| CAI8041838.1 | GABA-B RECEPTOR |
| CAI8041840.1 | BCL2-ASSOCIATED ATHANOGENE |
| CAI8041841.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 |
| CAI8041842.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 |
| CAI8041843.1 | RETINOL DEHYDROGENASE |
| CAI8041844.1 | RETINOL DEHYDROGENASE |
| CAI8041845.1 | RETINOL DEHYDROGENASE |
| CAI8041846.1 | |
| CAI8041847.1 | |
| CAI8041849.1 | |
| CAI8041848.1 | |
| CAI8041854.1 | EPH RECEPTOR A5 |
| CAI8041851.1 | EPH RECEPTOR A5 |
| CAI8041852.1 | EPH RECEPTOR A5 |
| CAI8041853.1 | EPH RECEPTOR A5 |
| CAI8041850.1 | EPH RECEPTOR A5 |
| CAI8041855.1 | |
| CAI8041856.1 | NUCLEAR PORE COMPLEX PROTEIN NUP160 |
| CAI8041857.1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| CAI8041858.1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| CAI8041860.1 | IQ DOMAIN-CONTAINING PROTEIN D |
| CAI8041861.1 | IQ DOMAIN-CONTAINING PROTEIN D |
| CAI8041862.1 | IQ DOMAIN-CONTAINING PROTEIN D |
| CAI8041859.1 | IQ DOMAIN-CONTAINING PROTEIN D |
| CAI8041863.1 | CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE |
| CAI8041864.1 | S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE |
| CAI8041866.1 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
| CAI8041865.1 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
| CAI8041870.1 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
| CAI8041869.1 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
| CAI8041868.1 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
| CAI8041867.1 | DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL |
