Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041621.1 | PROTEIN SIDEKICK |
| CAI8041622.1 | |
| CAI8041623.1 | PROTEIN SIDEKICK |
| CAI8041626.1 | |
| CAI8041624.1 | |
| CAI8041627.1 | |
| CAI8041629.1 | |
| CAI8041628.1 | |
| CAI8041630.1 | |
| CAI8041625.1 | |
| CAI8041631.1 | |
| CAI8041632.1 | |
| CAI8041633.1 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
| CAI8041635.1 | UNCHARACTERIZED |
| CAI8041634.1 | |
| CAI8041636.1 | UNCHARACTERIZED |
| CAI8041637.1 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2 |
| CAI8041638.1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| CAI8041639.1 | SAP30 |
| CAI8041640.1 | SAP30 |
| CAI8041647.1 | SUGAR HYDROLASE-RELATED |
| CAI8041646.1 | SUGAR HYDROLASE-RELATED |
| CAI8041645.1 | SUGAR HYDROLASE-RELATED |
| CAI8041644.1 | SUGAR HYDROLASE-RELATED |
| CAI8041642.1 | SUGAR HYDROLASE-RELATED |
| CAI8041643.1 | SUGAR HYDROLASE-RELATED |
| CAI8041641.1 | SUGAR HYDROLASE-RELATED |
| CAI8041648.1 | SUGAR HYDROLASE-RELATED |
| CAI8041649.1 | SUGAR HYDROLASE-RELATED |
| CAI8041650.1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| CAI8041651.1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| CAI8041652.1 | HIGH MOBILITY GROUP PROTEIN DSP1 |
| CAI8041655.1 | UNCHARACTERIZED |
| CAI8041653.1 | UNCHARACTERIZED |
| CAI8041654.1 | UNCHARACTERIZED |
| CAI8041656.1 | |
| CAI8041657.1 | SARCOGLYCANS |
| CAI8041658.1 | SARCOGLYCANS |
| CAI8041659.1 | |
| CAI8041660.1 | |
| CAI8041662.1 | |
| CAI8041661.1 | |
| CAI8041663.1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| CAI8041664.1 | |
| CAI8041666.1 | MEMBRANE COMPONENT OF ABC TRANSPORTER YHHJ-RELATED |
| CAI8041665.1 | MEMBRANE COMPONENT OF ABC TRANSPORTER YHHJ-RELATED |
| CAI8041667.1 | MEMBRANE COMPONENT OF ABC TRANSPORTER YHHJ-RELATED |
| CAI8041668.1 | |
| CAI8041669.1 | |
| CAI8041670.1 |
