Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041421.1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| CAI8041422.1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| CAI8041423.1 | |
| CAI8041424.1 | |
| CAI8041425.1 | |
| CAI8041428.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8041427.1 | ATP-DEPENDENT RNA AND DNA HELICASE |
| CAI8041426.1 | |
| CAI8041430.1 | ABRAXAS FAMILY MEMBER |
| CAI8041431.1 | ABRAXAS FAMILY MEMBER |
| CAI8041429.1 | ABRAXAS FAMILY MEMBER |
| CAI8041432.1 | ABRAXAS FAMILY MEMBER |
| CAI8041433.1 | ABRAXAS FAMILY MEMBER |
| CAI8041435.1 | ABRAXAS FAMILY MEMBER |
| CAI8041434.1 | ABRAXAS FAMILY MEMBER |
| CAI8041439.1 | EXOCYST COMPLEX COMPONENT 4 |
| CAI8041438.1 | EXOCYST COMPLEX COMPONENT 4 |
| CAI8041437.1 | EXOCYST COMPLEX COMPONENT 4 |
| CAI8041436.1 | |
| CAI8041440.1 | EXOCYST COMPLEX COMPONENT 4 |
| CAI8041441.1 | EXOCYST COMPLEX COMPONENT 4 |
| CAI8041442.1 | EXOCYST COMPLEX COMPONENT 4 |
| CAI8041443.1 | EXOCYST COMPLEX COMPONENT 4 |
| CAI8041444.1 | EXOCYST COMPLEX COMPONENT 4 |
| CAI8041446.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED |
| CAI8041447.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED |
| CAI8041445.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED |
| CAI8041448.1 | S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN |
| CAI8041449.1 | UNCHARACTERIZED |
| CAI8041450.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 152 |
| CAI8041451.1 | |
| CAI8041452.1 | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED |
| CAI8041453.1 | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED |
| CAI8041454.1 | RING FINGER PROTEIN 37 |
| CAI8041455.1 | |
| CAI8041456.1 | |
| CAI8041457.1 | CCAAT-BINDING FACTOR-RELATED |
| CAI8041459.1 | CCAAT-BINDING FACTOR-RELATED |
| CAI8041458.1 | CCAAT-BINDING FACTOR-RELATED |
| CAI8041460.1 | CCAAT-BINDING FACTOR-RELATED |
| CAI8041461.1 | 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1 |
| CAI8041462.1 | 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1 |
| CAI8041463.1 | GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2 |
| CAI8041464.1 | GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2 |
| CAI8041465.1 | CLASP |
| CAI8041471.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8041470.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8041472.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8041473.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8041469.1 |
