Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041271.1 | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 |
| CAI8041272.1 | BC025462 PROTEIN |
| CAI8041273.1 | |
| CAI8041275.1 | |
| CAI8041274.1 | |
| CAI8041276.1 | |
| CAI8041277.1 | NOP14 |
| CAI8041278.1 | NOP14 |
| CAI8041281.1 | NOP14 |
| CAI8041279.1 | NOP14 |
| CAI8041280.1 | NOP14 |
| CAI8041283.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8041282.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8041285.1 | SET DOMAIN PROTEINS |
| CAI8041284.1 | CONDENSIN COMPLEX SUBUNIT 3-RELATED |
| CAI8041286.1 | CYCLINS |
| CAI8041287.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 24 |
| CAI8041288.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 24 |
| CAI8041289.1 | CTCL TUMOR ANTIGEN HD-CL-01 |
| CAI8041290.1 | CTCL TUMOR ANTIGEN HD-CL-01 |
| CAI8041291.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53 |
| CAI8041292.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53 |
| CAI8041293.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8041296.1 | PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3 |
| CAI8041295.1 | PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3 |
| CAI8041294.1 | ALPHA-L-FUCOSIDASE |
| CAI8041297.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8041298.1 | ALPHA CATENIN |
| CAI8041299.1 | HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED |
| CAI8041300.1 | |
| CAI8041301.1 | NARDILYSIN |
| CAI8041302.1 | NARDILYSIN |
| CAI8041303.1 | NARDILYSIN |
| CAI8041304.1 | METHIONINE SYNTHASE |
| CAI8041305.1 | METHIONINE SYNTHASE |
| CAI8041306.1 | |
| CAI8041307.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8041308.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8041309.1 | NUCLEOTIDE KINASE |
| CAI8041310.1 | LINEARMYCIN RESISTANCE ATP-BINDING PROTEIN LNRL |
| CAI8041311.1 | RADICAL SAM DOMAIN PROTEIN |
| CAI8041312.1 | |
| CAI8041313.1 | PQQC-LIKE PROTEIN |
| CAI8041314.1 | HYDROLASE C777.06C-RELATED-RELATED |
| CAI8041315.1 | QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) |
| CAI8041317.1 | HOMEOBOX PROTEIN EMX-RELATED |
| CAI8041316.1 | HOMEOBOX PROTEIN EMX-RELATED |
| CAI8041321.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041320.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8041319.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
