Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8041121.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI8041122.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8041123.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8041124.1 | TRYPTOPHAN BIOSYNTHESIS PROTEIN |
| CAI8041125.1 | N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE |
| CAI8041126.1 | TRYPTOPHAN SYNTHASE-RELATED |
| CAI8041127.1 | TRYPTOPHAN SYNTHASE-RELATED |
| CAI8041128.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI8041129.1 | UNCHARACTERIZED |
| CAI8041133.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041132.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041131.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041130.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041134.1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
| CAI8041135.1 | |
| CAI8041137.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8041136.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8041138.1 | METHIONYL-TRNA SYNTHETASE |
| CAI8041139.1 | TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER |
| CAI8041140.1 | RECBCD ENZYME SUBUNIT RECC |
| CAI8041141.1 | 37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL |
| CAI8041142.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8041143.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8041145.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8041144.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8041146.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8041147.1 | |
| CAI8041148.1 | KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL |
| CAI8041149.1 | SIMILAR TO CYSTEINE PROTEINASE |
| CAI8041150.1 | |
| CAI8041151.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8041152.1 | |
| CAI8041153.1 | PHYTANOYL-COA DIOXYGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_2G15850) |
| CAI8041154.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI8041155.1 | |
| CAI8041156.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8041157.1 | SIMILAR TO CYSTEINE PROTEINASE |
| CAI8041158.1 | SUBTILISIN-RELATED |
| CAI8041159.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8041160.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8041161.1 | NODULIN 6 |
| CAI8041162.1 | COLD SHOCK DOMAIN CONTAINING PROTEINS |
| CAI8041163.1 | SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ |
| CAI8041164.1 | |
| CAI8041165.1 | OXIDOREDUCTASE |
| CAI8041166.1 | OXIDOREDUCTASE |
| CAI8041167.1 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE |
| CAI8041169.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI8041168.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI8041170.1 | GLYCOSYLTRANSFERASE WBBK-RELATED |
