Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040871.1 | D-MALATE DEHYDROGENASE [DECARBOXYLATING] |
| CAI8040872.1 | |
| CAI8040873.1 | |
| CAI8040876.1 | - |
| CAI8040875.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8040874.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8040877.1 | |
| CAI8040878.1 | 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE |
| CAI8040879.1 | 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE |
| CAI8040880.1 | |
| CAI8040881.1 | HSPC111 PROTEIN-RELATED |
| CAI8040882.1 | HSPC111 PROTEIN-RELATED |
| CAI8040883.1 | NF-KAPPA B ACTIVATING PROTEIN |
| CAI8040885.1 | |
| CAI8040884.1 | NF-KAPPA B ACTIVATING PROTEIN |
| CAI8040886.1 | NF-KAPPA B ACTIVATING PROTEIN |
| CAI8040888.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8040887.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8040889.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8040890.1 | |
| CAI8040891.1 | |
| CAI8040893.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8040894.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8040892.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8040895.1 | |
| CAI8040896.1 | |
| CAI8040898.1 | PHD FINGER PROTEINS |
| CAI8040899.1 | PHD FINGER PROTEINS |
| CAI8040897.1 | |
| CAI8040900.1 | PHD FINGER PROTEINS |
| CAI8040901.1 | OS02G0815200 PROTEIN |
| CAI8040902.1 | |
| CAI8040903.1 | UNCHARACTERIZED |
| CAI8040904.1 | ARYLACETAMIDE DEACETYLASE |
| CAI8040905.1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| CAI8040906.1 | SERINE PEPTIDASE S9 FAMILY MEMBER |
| CAI8040907.1 | QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) |
| CAI8040908.1 | HYDROLASE OF PHP SUPERFAMILY-RELATED PROTEIN |
| CAI8040909.1 | MALTOSE TRANSPORT SYSTEM PERMEASE-RELATED |
| CAI8040910.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8040911.1 | GTP-BINDING PROTEIN HFLX |
| CAI8040913.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8040912.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8040915.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8040914.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8040917.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8040916.1 | |
| CAI8040918.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8040919.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8040920.1 |
