Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040571.1 | |
| CAI8040572.1 | |
| CAI8040573.1 | |
| CAI8040574.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8040576.1 | RIBOSOMAL PROTEIN S7 |
| CAI8040575.1 | RIBOSOMAL PROTEIN S7 |
| CAI8040577.1 | RIBOSOMAL PROTEIN S7 |
| CAI8040578.1 | RIBOSOMAL PROTEIN S7 |
| CAI8040579.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI8040580.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI8040581.1 | L-SERYL-TRNA(SEC) SELENIUM TRANSFERASE |
| CAI8040582.1 | ELONGATION FACTOR TU-RELATED |
| CAI8040583.1 | GLYCERATE KINASE |
| CAI8040584.1 | ACYL-MALONYL CONDENSING ENZYME-RELATED |
| CAI8040585.1 | PYRUVATE CARBOXYLASE SUBUNIT A |
| CAI8040586.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
| CAI8040587.1 | |
| CAI8040588.1 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
| CAI8040590.1 | 60S RIBOSOMAL PROTEIN L19 |
| CAI8040589.1 | 60S RIBOSOMAL PROTEIN L19 |
| CAI8040591.1 | 60S RIBOSOMAL PROTEIN L19 |
| CAI8040593.1 | PROTEIN MAELSTROM HOMOLOG |
| CAI8040592.1 | PROTEIN MAELSTROM HOMOLOG |
| CAI8040594.1 | |
| CAI8040597.1 | |
| CAI8040596.1 | |
| CAI8040595.1 | |
| CAI8040599.1 | |
| CAI8040598.1 | |
| CAI8040603.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8040600.1 | |
| CAI8040602.1 | |
| CAI8040601.1 | |
| CAI8040605.1 | |
| CAI8040604.1 | |
| CAI8040606.1 | |
| CAI8040607.1 | |
| CAI8040613.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040612.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8040611.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040610.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040609.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8040608.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8040616.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8040615.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8040614.1 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
| CAI8040617.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040618.1 | PROTEIN SIDEKICK |
| CAI8040619.1 | |
| CAI8040621.1 |
