Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040521.1 | METHIONINE SYNTHASE |
| CAI8040525.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8040524.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8040523.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8040522.1 | |
| CAI8040526.1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
| CAI8040527.1 | |
| CAI8040533.1 | ARFAPTIN-RELATED |
| CAI8040532.1 | ARFAPTIN-RELATED |
| CAI8040529.1 | ARFAPTIN-RELATED |
| CAI8040530.1 | ARFAPTIN-RELATED |
| CAI8040528.1 | ARFAPTIN-RELATED |
| CAI8040531.1 | ARFAPTIN-RELATED |
| CAI8040534.1 | MULTIPLE PDZ DOMAIN PROTEIN |
| CAI8040536.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8040535.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8040537.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8040538.1 | |
| CAI8040539.1 | |
| CAI8040540.1 | |
| CAI8040541.1 | |
| CAI8040544.1 | BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 |
| CAI8040545.1 | BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 |
| CAI8040542.1 | BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 |
| CAI8040543.1 | BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 |
| CAI8040549.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| CAI8040548.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| CAI8040547.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| CAI8040546.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| CAI8040550.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| CAI8040551.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| CAI8040552.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED |
| CAI8040553.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8040554.1 | 2-HYDROXYACYL-COA LYASE |
| CAI8040555.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8040556.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8040557.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8040558.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8040559.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8040560.1 | BRANCHED-CHAIN AMINO ACID TRANSPORT SYSTEM PERMEASE PROTEIN LIVH |
| CAI8040561.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8040562.1 | |
| CAI8040563.1 | ANTITOXIN HIGA-1 |
| CAI8040564.1 | TOXIN HIGB-1 |
| CAI8040565.1 | AMINOTRANSFERASE |
| CAI8040566.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN |
| CAI8040567.1 | 5-OXOPROLINASE RELATED |
| CAI8040568.1 | 5-OXOPROLINASE RELATED |
| CAI8040569.1 | 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED |
| CAI8040570.1 | 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED |
