Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040221.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| CAI8040222.1 | CYTOKINE RECEPTOR |
| CAI8040223.1 | |
| CAI8040224.1 | BONUS, ISOFORM C-RELATED |
| CAI8040225.1 | |
| CAI8040226.1 | |
| CAI8040227.1 | |
| CAI8040228.1 | LD33804P |
| CAI8040229.1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| CAI8040230.1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| CAI8040231.1 | OS02G0202900 PROTEIN |
| CAI8040232.1 | LD33804P |
| CAI8040233.1 | LD33804P |
| CAI8040234.1 | LD33804P |
| CAI8040235.1 | - |
| CAI8040238.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8040236.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8040237.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8040239.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8040242.1 | |
| CAI8040241.1 | |
| CAI8040240.1 | |
| CAI8040243.1 | |
| CAI8040245.1 | |
| CAI8040244.1 | |
| CAI8040246.1 | |
| CAI8040247.1 | |
| CAI8040248.1 | |
| CAI8040249.1 | |
| CAI8040250.1 | ALDEHYDE DEHYDROGENASE |
| CAI8040251.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8040253.1 | |
| CAI8040252.1 | |
| CAI8040254.1 | |
| CAI8040255.1 | |
| CAI8040256.1 | |
| CAI8040257.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8040259.1 | UNCHARACTERIZED |
| CAI8040258.1 | UNCHARACTERIZED |
| CAI8040260.1 | UNCHARACTERIZED |
| CAI8040261.1 | UNCHARACTERIZED |
| CAI8040262.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8040263.1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8040264.1 | |
| CAI8040265.1 | |
| CAI8040267.1 | |
| CAI8040266.1 | |
| CAI8040268.1 | |
| CAI8040269.1 | |
| CAI8040270.1 |
