Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040320.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
| CAI8040322.1 | |
| CAI8040323.1 | |
| CAI8040324.1 | |
| CAI8040325.1 | TRANSPOSON |
| CAI8040327.1 | |
| CAI8040326.1 | |
| CAI8040330.1 | |
| CAI8040328.1 | |
| CAI8040329.1 | COLLAGEN ALPHA |
| CAI8040331.1 | |
| CAI8040332.1 | |
| CAI8040333.1 | |
| CAI8040335.1 | |
| CAI8040334.1 | |
| CAI8040336.1 | |
| CAI8040337.1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| CAI8040340.1 | |
| CAI8040341.1 | |
| CAI8040339.1 | |
| CAI8040342.1 | |
| CAI8040343.1 | |
| CAI8040338.1 | |
| CAI8040344.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8040345.1 | HEMIN IMPORT ATP-BINDING PROTEIN HMUV |
| CAI8040346.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8040349.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8040347.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8040348.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8040350.1 | POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN |
| CAI8040351.1 | ALANYL-TRNA SYNTHETASE |
| CAI8040352.1 | ALANYL-TRNA SYNTHETASE |
| CAI8040353.1 | |
| CAI8040354.1 | GLUTAMYL-TRNA REDUCTASE |
| CAI8040355.1 | FORMATE DEHYDROGENASE 1 |
| CAI8040356.1 | |
| CAI8040357.1 | FORMATE DEHYDROGENASE 1 |
| CAI8040358.1 | MONOACYLGLYCEROL LIPASE |
| CAI8040359.1 | NITRILASE C965.09-RELATED |
| CAI8040360.1 | |
| CAI8040361.1 | BLR3681 PROTEIN |
| CAI8040362.1 | |
| CAI8040364.1 | EPOXIDE HYDROLASE |
| CAI8040363.1 | EPOXIDE HYDROLASE |
| CAI8040365.1 | |
| CAI8040366.1 | APOLIPOPROTEIN N-ACYLTRANSFERASE |
| CAI8040367.1 | TWO-COMPONENT HISTIDINE PROTEIN KINASE |
| CAI8040368.1 | HYPOTHETICAL CYTOSOLIC PROTEIN |
| CAI8040369.1 | |
| CAI8040370.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
