Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040271.1 | |
| CAI8040272.1 | |
| CAI8040273.1 | |
| CAI8040274.1 | |
| CAI8040275.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8040276.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8040277.1 | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE |
| CAI8040278.1 | |
| CAI8040279.1 | |
| CAI8040281.1 | CYTOKINE RECEPTOR |
| CAI8040280.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED |
| CAI8040285.1 | ACTIN |
| CAI8040284.1 | ACTIN |
| CAI8040283.1 | ACTIN |
| CAI8040282.1 | ACTIN |
| CAI8040286.1 | |
| CAI8040289.1 | PEPTIDASE S8 |
| CAI8040288.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8040287.1 | |
| CAI8040290.1 | PEPTIDASE S8 |
| CAI8040291.1 | PEPTIDASE S8 |
| CAI8040292.1 | PEPTIDASE S8 |
| CAI8040293.1 | PEPTIDASE S8 |
| CAI8040294.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
| CAI8040295.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8040296.1 | TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL |
| CAI8040297.1 | |
| CAI8040298.1 | ENOYL-COA HYDRATASE |
| CAI8040299.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8040300.1 | |
| CAI8040301.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8040302.1 | |
| CAI8040303.1 | BITESIZE, ISOFORM I |
| CAI8040304.1 | |
| CAI8040306.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8040307.1 | |
| CAI8040308.1 | |
| CAI8040305.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8040309.1 | |
| CAI8040310.1 | |
| CAI8040314.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8040313.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8040312.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8040311.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8040315.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8040316.1 | KELCH DOMAIN-CONTAINING PROTEIN |
| CAI8040317.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8040318.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8040319.1 | |
| CAI8040321.1 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 |
