Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040371.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8040372.1 | TRANSCRIPTION TERMINATION FACTOR RHO |
| CAI8040373.1 | APOLIPOPROTEIN N-ACYLTRANSFERASE |
| CAI8040374.1 | |
| CAI8040375.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8040376.1 | RIBOSOMAL PROTEIN L27 |
| CAI8040377.1 | |
| CAI8040378.1 | |
| CAI8040379.1 | IOJAP SUPERFAMILY ORTHOLOG |
| CAI8040380.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8040381.1 | METALLOPROTEASE M41 FTSH |
| CAI8040382.1 | METALLOPROTEASE M41 FTSH |
| CAI8040383.1 | METALLOPROTEASE M41 FTSH |
| CAI8040384.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI8040385.1 | |
| CAI8040386.1 | PEPTIDASE-RELATED |
| CAI8040387.1 | NUCLEAR MOVEMENT PROTEIN NUDC |
| CAI8040391.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8040392.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8040389.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8040388.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8040390.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8040393.1 | HISTONE ACETYLTRANSFERASE |
| CAI8040394.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8040395.1 | - |
| CAI8040401.1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| CAI8040400.1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| CAI8040399.1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| CAI8040398.1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| CAI8040397.1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| CAI8040396.1 | |
| CAI8040402.1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
| CAI8040405.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 169 |
| CAI8040403.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 169 |
| CAI8040404.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 169 |
| CAI8040406.1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49 |
| CAI8040407.1 | RIBONUCLEASE J |
| CAI8040408.1 | SPORULATION PROTEIN RELATED |
| CAI8040409.1 | PHOSPHOSERINE PHOSPHATASE |
| CAI8040410.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI8040411.1 | THIAZOLE SYNTHASE |
| CAI8040412.1 | THIAZOLE SYNTHASE |
| CAI8040413.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8040414.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8040415.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8040416.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8040417.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8040418.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8040419.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8040422.1 | D-GALACTONATE DEHYDRATASE-RELATED |
