Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040121.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8040122.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8040123.1 | FIBRILLIN-RELATED |
| CAI8040125.1 | FIBRILLIN-RELATED |
| CAI8040124.1 | FIBRILLIN-RELATED |
| CAI8040129.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8040130.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8040127.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040126.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040128.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040131.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8040132.1 | |
| CAI8040133.1 | |
| CAI8040137.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8040136.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8040135.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8040134.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8040138.1 | |
| CAI8040139.1 | |
| CAI8040140.1 | |
| CAI8040141.1 | |
| CAI8040143.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI8040142.1 | |
| CAI8040144.1 | AD039 HT014 THIOREDOXIN FAMILY TRP26 |
| CAI8040145.1 | AD039 HT014 THIOREDOXIN FAMILY TRP26 |
| CAI8040146.1 | AD039 HT014 THIOREDOXIN FAMILY TRP26 |
| CAI8040148.1 | |
| CAI8040147.1 | |
| CAI8040149.1 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
| CAI8040150.1 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
| CAI8040152.1 | 40S RIBOSOMAL PROTEIN S12 |
| CAI8040151.1 | 40S RIBOSOMAL PROTEIN S12 |
| CAI8040153.1 | |
| CAI8040154.1 | CT120 PROTEIN |
| CAI8040155.1 | |
| CAI8040156.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI8040157.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI8040159.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8040158.1 | L-THREONINE ALDOLASE-RELATED |
| CAI8040160.1 | GLUTAMINE-TRNA LIGASE |
| CAI8040161.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI8040162.1 | DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED |
| CAI8040163.1 | DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA' |
| CAI8040174.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040173.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040172.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040171.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040170.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040169.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8040168.1 | DNA-DIRECTED RNA POLYMERASE |
