Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8040019.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8040022.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI8040023.1 | CHLORINASE MJ1651 |
| CAI8040024.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8040025.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8040031.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8040030.1 | ANKYRIN REPEAT PROTEIN |
| CAI8040028.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI8040029.1 | MOLTING PROTEIN MLT-4 |
| CAI8040027.1 | MOLTING PROTEIN MLT-4 |
| CAI8040026.1 | ANKYRIN REPEAT PROTEIN |
| CAI8040032.1 | |
| CAI8040033.1 | |
| CAI8040034.1 | |
| CAI8040035.1 | |
| CAI8040039.1 | AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN |
| CAI8040038.1 | AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN |
| CAI8040037.1 | AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN |
| CAI8040036.1 | |
| CAI8040040.1 | AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN |
| CAI8040041.1 | AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN |
| CAI8040042.1 | AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN |
| CAI8040043.1 | |
| CAI8040045.1 | |
| CAI8040044.1 | |
| CAI8040046.1 | |
| CAI8040047.1 | |
| CAI8040048.1 | |
| CAI8040049.1 | |
| CAI8040051.1 | - |
| CAI8040050.1 | - |
| CAI8040052.1 | |
| CAI8040053.1 | - |
| CAI8040056.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8040055.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8040054.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8040057.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8040059.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8040058.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8040060.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8040061.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8040062.1 | |
| CAI8040067.1 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
| CAI8040066.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8040065.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8040064.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8040063.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8040068.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8040069.1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| CAI8040070.1 |
