Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039770.1 | |
| CAI8039771.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8039773.1 | |
| CAI8039774.1 | |
| CAI8039775.1 | |
| CAI8039776.1 | |
| CAI8039777.1 | |
| CAI8039778.1 | |
| CAI8039779.1 | |
| CAI8039782.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI8039781.1 | |
| CAI8039780.1 | |
| CAI8039783.1 | XANTHINE DEHYDROGENASE |
| CAI8039784.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8039785.1 | |
| CAI8039786.1 | OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT |
| CAI8039787.1 | XANTHINE DEHYDROGENASE SUBUNIT C-RELATED |
| CAI8039788.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8039791.1 | GABA-B RECEPTOR |
| CAI8039789.1 | GABA-B RECEPTOR |
| CAI8039790.1 | GABA-B RECEPTOR |
| CAI8039792.1 | |
| CAI8039793.1 | |
| CAI8039794.1 | |
| CAI8039795.1 | UBIQUITIN |
| CAI8039796.1 | |
| CAI8039797.1 | TRANSPOSON |
| CAI8039799.1 | GABA-B RECEPTOR |
| CAI8039798.1 | GABA-B RECEPTOR |
| CAI8039800.1 | GABA-B RECEPTOR |
| CAI8039801.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8039802.1 | MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT |
| CAI8039803.1 | MOLYBDOPTERIN SYNTHASE RELATED |
| CAI8039804.1 | DNA REPAIR PROTEIN RADA |
| CAI8039805.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8039806.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8039807.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC |
| CAI8039808.1 | |
| CAI8039809.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8039810.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8039811.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8039812.1 | ASPARTATE 1-DECARBOXYLASE |
| CAI8039813.1 | ASPARTATE 1-DECARBOXYLASE |
| CAI8039814.1 | |
| CAI8039815.1 | |
| CAI8039816.1 | |
| CAI8039817.1 | |
| CAI8039818.1 | |
| CAI8039819.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8039820.1 | ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE |
