Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039621.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8039622.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8039623.1 | |
| CAI8039624.1 | ACYL-COA SYNTHETASE |
| CAI8039625.1 | NITROGEN REGULATORY PROTEIN P-II |
| CAI8039626.1 | NITROGEN REGULATORY PROTEIN P-II |
| CAI8039627.1 | THYMOCYTE NUCLEAR PROTEIN 1 |
| CAI8039628.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8039629.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8039630.1 | GLYOXALASE FAMILY PROTEIN |
| CAI8039631.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI8039632.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8039633.1 | |
| CAI8039634.1 | CTP-DEPENDENT DIACYLGLYCEROL KINASE 1 |
| CAI8039635.1 | GLYCERATE KINASE |
| CAI8039636.1 | |
| CAI8039637.1 | LACTATE UTILIZATION PROTEIN C |
| CAI8039638.1 | LACTATE UTILIZATION PROTEIN B |
| CAI8039639.1 | |
| CAI8039640.1 | GEO12009P1 |
| CAI8039642.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8039641.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8039643.1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
| CAI8039644.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC |
| CAI8039645.1 | SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA |
| CAI8039646.1 | FERREDOXIN-THIOREDOXIN REDUCTASE CATALYTIC CHAIN, CHLOROPLASTIC |
| CAI8039647.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8039648.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8039649.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8039650.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8039651.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8039652.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8039653.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8039654.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8039655.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8039656.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8039657.1 | FLAVIN-DEPENDENT THYMIDYLATE SYNTHASE |
| CAI8039658.1 | ANTI-SIGMA-K FACTOR RSKA |
| CAI8039659.1 | RNA POLYMERASE ECF-TYPE SIGMA FACTO |
| CAI8039660.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI8039661.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8039662.1 | |
| CAI8039663.1 | LYASE BETA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G13030)-RELATED |
| CAI8039664.1 | LYASE BETA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G13030)-RELATED |
| CAI8039665.1 | LYASE BETA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G13030)-RELATED |
| CAI8039666.1 | - |
| CAI8039667.1 | |
| CAI8039668.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI8039669.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8039670.1 | FORMAMIDASE C869.04-RELATED |
