About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8014151.1ACETYLTRANSFERASE
CAI8014152.1PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE
CAI8014153.1ADENYLOSUCCINATE LYASE
CAI8014154.1ADENYLOSUCCINATE LYASE
CAI8014155.1BLL1576 PROTEIN
CAI8014156.1NICOTINATE PHOSPHORIBOSYLTRANSFERASE
CAI8014157.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8014158.1MAJOR FACILITATOR SUPERFAMILY MULTIDRUG TRANSPORTER MFSC
CAI8014159.1BIFUNCTIONAL TH2 PROTEIN
CAI8014160.1SUGAR KINASE
CAI8014161.1SUGAR KINASE
CAI8014162.1METALLO-BETA-LACTAMASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G12770)
CAI8014163.1THYMOCYTE NUCLEAR PROTEIN 1
CAI8014164.1RESPONSE REGULATOR RCP1-RELATED
CAI8014165.1HEMIN IMPORT ATP-BINDING PROTEIN HMUV
CAI8014168.1FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN
CAI8014166.1FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN
CAI8014167.1FERRIC ENTEROBACTIN TRANSPORT SYSTEM PERMEASE PROTEIN
CAI8014169.1OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
CAI8014170.1DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED
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