Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039321.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8039322.1 | |
| CAI8039323.1 | 60S ACIDIC RIBOSOMAL PROTEIN P1 |
| CAI8039325.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8039324.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI8039326.1 | CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED |
| CAI8039327.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI8039328.1 | D-AMINOACYL-TRNA DEACYLASE |
| CAI8039329.1 | 60S RIBOSOMAL PROTEIN L19 |
| CAI8039330.1 | 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N |
| CAI8039331.1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP |
| CAI8039332.1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP |
| CAI8039333.1 | PHOSPHOENOLPYRUVATE CARBOXYKINASE ATP |
| CAI8039334.1 | SUBTILISIN-RELATED |
| CAI8039335.1 | 37S RIBOSOMAL PROTEIN S26, MITOCHONDRIAL |
| CAI8039336.1 | |
| CAI8039337.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8039338.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8039339.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8039340.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI8039342.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8039341.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8039343.1 | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER |
| CAI8039344.1 | 60S RIBOSOMAL PROTEIN L21 |
| CAI8039345.1 | 60S RIBOSOMAL PROTEIN L21 |
| CAI8039346.1 | RNA POLYMERASE RPB4 |
| CAI8039347.1 | TRNA-SPECIFIC ADENOSINE DEAMINASE-RELATED |
| CAI8039348.1 | DIMETHYLADENOSINE TRANSFERASE |
| CAI8039349.1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| CAI8039350.1 | |
| CAI8039351.1 | PROHIBITIN |
| CAI8039352.1 | ACETATE--COA LIGASE [ADP-FORMING] |
| CAI8039353.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8039354.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8039355.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8039356.1 | IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL |
| CAI8039357.1 | RIBOFLAVIN KINASE |
| CAI8039358.1 | FAD SYNTHASE |
| CAI8039359.1 | RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN |
| CAI8039360.1 | HOMOCITRATE SYNTHASE |
| CAI8039361.1 | |
| CAI8039362.1 | |
| CAI8039363.1 | |
| CAI8039364.1 | |
| CAI8039365.1 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| CAI8039367.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8039366.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8039368.1 | CORNICHON-RELATED |
| CAI8039369.1 | CORNICHON-RELATED |
| CAI8039370.1 | UNCHARACTERIZED |
