Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8039171.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8039172.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8039173.1 | TREHALOSE-6-PHOSPHATE SYNTHASE |
| CAI8039174.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI8039178.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8039177.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8039176.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8039175.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8039179.1 | |
| CAI8039181.1 | FAD-DEPENDENT OXIDOREDUCTASE |
| CAI8039180.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8039182.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8039183.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8039184.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8039185.1 | FERROUS IRON TRANSPORT PROTEIN B |
| CAI8039186.1 | IRON (METAL) DEPENDENT REPRESSOR, DTXR FAMILY |
| CAI8039187.1 | |
| CAI8039188.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8039189.1 | |
| CAI8039192.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8039191.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8039190.1 | IMMUNOGLOBULIN FC RECEPTOR |
| CAI8039193.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8039194.1 | PROTEIN SIDEKICK |
| CAI8039195.1 | |
| CAI8039196.1 | CARBONYL REDUCTASE 1-RELATED |
| CAI8039197.1 | |
| CAI8039198.1 | COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 |
| CAI8039200.1 | MUCIN 4-RELATED |
| CAI8039199.1 | MUCIN 4-RELATED |
| CAI8039201.1 | |
| CAI8039203.1 | |
| CAI8039202.1 | |
| CAI8039204.1 | |
| CAI8039206.1 | AF4/FMR2 FAMILY MEMBER |
| CAI8039205.1 | |
| CAI8039207.1 | |
| CAI8039208.1 | |
| CAI8039209.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8039210.1 | |
| CAI8039211.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI8039212.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI8039213.1 | AMINO-ACID AMINOTRANSFERASE |
| CAI8039214.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8039215.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8039216.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8039217.1 | ADENYLYLSULFATE REDUCTASE, BETA SUBUNIT |
| CAI8039218.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 |
| CAI8039219.1 | |
| CAI8039220.1 | GEO12009P1 |
