Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038971.1 | |
| CAI8038972.1 | ACETYL-COA CARBOXYLASE, ISOFORM A |
| CAI8038973.1 | |
| CAI8038974.1 | |
| CAI8038982.1 | |
| CAI8038981.1 | |
| CAI8038978.1 | |
| CAI8038975.1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| CAI8038979.1 | |
| CAI8038977.1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| CAI8038980.1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| CAI8038976.1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
| CAI8038983.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8038984.1 | SHIPPO-1-RELATED |
| CAI8038985.1 | |
| CAI8038986.1 | |
| CAI8038987.1 | |
| CAI8038988.1 | |
| CAI8038990.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8038991.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8038989.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8038995.1 | |
| CAI8038994.1 | |
| CAI8038996.1 | |
| CAI8038993.1 | |
| CAI8038992.1 | |
| CAI8038997.1 | |
| CAI8038999.1 | XAA-PRO AMINOPEPTIDASE 3 |
| CAI8038998.1 | XAA-PRO AMINOPEPTIDASE 3 |
| CAI8039001.1 | XAA-PRO AMINOPEPTIDASE 3 |
| CAI8039000.1 | XAA-PRO AMINOPEPTIDASE 3 |
| CAI8039002.1 | XAA-PRO AMINOPEPTIDASE 3 |
| CAI8039004.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 5-RELATED |
| CAI8039003.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8039005.1 | RAB GDP/GTP EXCHANGE FACTOR |
| CAI8039006.1 | B-CELL LYMPHOMA/LEUKEMIA 10 |
| CAI8039009.1 | RAW, ISOFORM A |
| CAI8039008.1 | RAW, ISOFORM A |
| CAI8039007.1 | RAW, ISOFORM A |
| CAI8039010.1 | RAW, ISOFORM A |
| CAI8039011.1 | INWARD RECTIFIER POTASSIUM CHANNEL |
| CAI8039012.1 | CALCIUM BINDING PROTEINS |
| CAI8039013.1 | PNAS-RELATED |
| CAI8039014.1 | PNAS-RELATED |
| CAI8039017.1 | METALLOPROTEASE TLDD |
| CAI8039015.1 | METALLOPROTEASE TLDD |
| CAI8039016.1 | METALLOPROTEASE TLDD |
| CAI8039018.1 | |
| CAI8039022.1 | PRESEQUENCE PROTEASE |
| CAI8039021.1 | PRESEQUENCE PROTEASE |
