Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038773.1 | DEP DOMAIN PROTEIN |
| CAI8038774.1 | DEP DOMAIN PROTEIN |
| CAI8038770.1 | DEP DOMAIN PROTEIN |
| CAI8038771.1 | DEP DOMAIN PROTEIN |
| CAI8038775.1 | |
| CAI8038779.1 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
| CAI8038778.1 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
| CAI8038776.1 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
| CAI8038777.1 | |
| CAI8038781.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8038780.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8038782.1 | AMINOHYDROLASE SSNA-RELATED |
| CAI8038783.1 | - |
| CAI8038784.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8038785.1 | PYRUVATE SYNTHASE SUBUNIT PORB |
| CAI8038786.1 | |
| CAI8038787.1 | PYRUVATE-FLAVODOXIN OXIDOREDUCTASE-RELATED |
| CAI8038788.1 | PYRUVATE SYNTHASE SUBUNIT PORC |
| CAI8038789.1 | |
| CAI8038790.1 | UNCHARACTERIZED |
| CAI8038793.1 | CWF19, CELL CYCLE CONTROL PROTEIN |
| CAI8038792.1 | CWF19, CELL CYCLE CONTROL PROTEIN |
| CAI8038791.1 | CWF19, CELL CYCLE CONTROL PROTEIN |
| CAI8038794.1 | CWF19, CELL CYCLE CONTROL PROTEIN |
| CAI8038795.1 | |
| CAI8038796.1 | |
| CAI8038799.1 | |
| CAI8038798.1 | |
| CAI8038797.1 | |
| CAI8038800.1 | |
| CAI8038801.1 | |
| CAI8038802.1 | |
| CAI8038803.1 | |
| CAI8038804.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8038805.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI8038806.1 | WNT RELATED |
| CAI8038807.1 | WNT RELATED |
| CAI8038809.1 | UNCHARACTERIZED |
| CAI8038808.1 | |
| CAI8038810.1 | |
| CAI8038811.1 | |
| CAI8038812.1 | |
| CAI8038813.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8038814.1 | |
| CAI8038815.1 | |
| CAI8038816.1 | |
| CAI8038817.1 | |
| CAI8038818.1 | |
| CAI8038824.1 | ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| CAI8038825.1 | ALPHA-MANNOSIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE |
