Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038519.1 | RED PROTEIN IK FACTOR CYTOKINE IK |
| CAI8038522.1 | RED PROTEIN IK FACTOR CYTOKINE IK |
| CAI8038523.1 | RED PROTEIN IK FACTOR CYTOKINE IK |
| CAI8038524.1 | RED PROTEIN IK FACTOR CYTOKINE IK |
| CAI8038525.1 | SARCOGLYCAN |
| CAI8038528.1 | SPHINGOSINE KINASE |
| CAI8038527.1 | SPHINGOSINE KINASE |
| CAI8038526.1 | SPHINGOSINE KINASE |
| CAI8038529.1 | TRANSAMIDASE |
| CAI8038530.1 | MCG48959-RELATED |
| CAI8038531.1 | ANTITOXIN HIGA-1 |
| CAI8038532.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8038536.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8038535.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8038534.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8038533.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8038540.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8038539.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8038538.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8038537.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8038541.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 3 |
| CAI8038542.1 | NADH DEHYDROGENASE SUBUNIT 1 |
| CAI8038543.1 | NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL |
| CAI8038544.1 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT ND4L |
| CAI8038545.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8038546.1 | NADH DEHYDROGENASE |
| CAI8038547.1 | CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE |
| CAI8038548.1 | ENOLASE |
| CAI8038549.1 | GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 |
| CAI8038550.1 | GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 |
| CAI8038551.1 | PREPHENATE DEHYDRATASE P PROTEIN |
| CAI8038552.1 | |
| CAI8038553.1 | POTASSIUM CHANNEL PROTEIN 2-RELATED-RELATED |
| CAI8038554.1 | COBALT-PRECORRIN-5B C(1)-METHYLTRANSFERASE |
| CAI8038555.1 | |
| CAI8038556.1 | |
| CAI8038557.1 | |
| CAI8038559.1 | |
| CAI8038558.1 | |
| CAI8038561.1 | HOST CELL FACTOR |
| CAI8038562.1 | HOST CELL FACTOR |
| CAI8038560.1 | |
| CAI8038563.1 | CENTROSOMAL PROTEIN 2 |
| CAI8038564.1 | RIBOPHORIN I |
| CAI8038567.1 | UNCHARACTERIZED |
| CAI8038566.1 | UNCHARACTERIZED |
| CAI8038565.1 | UNCHARACTERIZED |
| CAI8038568.1 | ARP2/3 COMPLEX 20 KD SUBUNIT |
| CAI8038569.1 | PLEXIN |
| CAI8038570.1 | TRANSPOSASE |
