Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038421.1 | GLUTATHIONE HYDROLASE |
| CAI8038422.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8038423.1 | VITELLOGENIN-RELATED |
| CAI8038425.1 | TWINFILIN |
| CAI8038424.1 | |
| CAI8038426.1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| CAI8038427.1 | |
| CAI8038428.1 | |
| CAI8038429.1 | |
| CAI8038432.1 | ELONGATOR COMPLEX PROTEIN 5 |
| CAI8038431.1 | ELONGATOR COMPLEX PROTEIN 5 |
| CAI8038430.1 | ELONGATOR COMPLEX PROTEIN 5 |
| CAI8038433.1 | ELONGATOR COMPLEX PROTEIN 5 |
| CAI8038436.1 | SESQUIPEDALIAN |
| CAI8038435.1 | SESQUIPEDALIAN |
| CAI8038434.1 | |
| CAI8038437.1 | BONUS, ISOFORM C-RELATED |
| CAI8038438.1 | MUCIN 12EA-RELATED |
| CAI8038439.1 | KELCH PROTEIN |
| CAI8038440.1 | |
| CAI8038441.1 | |
| CAI8038442.1 | |
| CAI8038443.1 | |
| CAI8038450.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038449.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038448.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038447.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038446.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038445.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038444.1 | |
| CAI8038451.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038452.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038453.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038454.1 | PROTEIN UNC-13 HOMOLOG |
| CAI8038455.1 | |
| CAI8038456.1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN 2 |
| CAI8038457.1 | CATION CHANNEL SPERM-ASSOCIATED PROTEIN 2 |
| CAI8038458.1 | |
| CAI8038464.1 | CENTROMERE PROTEIN E |
| CAI8038461.1 | CENTROMERE PROTEIN E |
| CAI8038462.1 | CENTROMERE PROTEIN E |
| CAI8038460.1 | CENTROMERE PROTEIN E |
| CAI8038463.1 | CENTROMERE PROTEIN E |
| CAI8038459.1 | CENTROMERE PROTEIN E |
| CAI8038465.1 | |
| CAI8038466.1 | FRATAXIN |
| CAI8038467.1 | |
| CAI8038468.1 | FRATAXIN |
| CAI8038470.1 | |
| CAI8038471.1 |
