Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8038121.1 | ALCOHOL DEHYDROGENASE |
| CAI8038122.1 | BCDNA.GH03377 |
| CAI8038123.1 | |
| CAI8038124.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8038125.1 | |
| CAI8038126.1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
| CAI8038128.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8038127.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI8038131.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8038130.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8038129.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI8038135.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8038134.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8038133.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8038132.1 | DISULFIDE OXIDOREDUCTASE |
| CAI8038136.1 | |
| CAI8038137.1 | NAD(P) TRANSHYDROGENASE |
| CAI8038138.1 | NAD(P) TRANSHYDROGENASE SUBUNIT BETA |
| CAI8038139.1 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE |
| CAI8038140.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8038141.1 | LD18447P |
| CAI8038143.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI8038142.1 | |
| CAI8038144.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI8038146.1 | RUN DOMAIN-CONTAINING 3 PROTEIN RUNDC3 |
| CAI8038145.1 | |
| CAI8038148.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8038147.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8038149.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8038150.1 | |
| CAI8038151.1 | |
| CAI8038152.1 | E3 UBIQUITIN-PROTEIN LIGASE SIAH2 |
| CAI8038153.1 | |
| CAI8038155.1 | |
| CAI8038154.1 | |
| CAI8038159.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8038161.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8038158.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8038157.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8038156.1 | |
| CAI8038162.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8038160.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8038164.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8038163.1 | |
| CAI8038165.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8038166.1 | |
| CAI8038167.1 | |
| CAI8038168.1 | |
| CAI8038169.1 | |
| CAI8038170.1 |
