Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037968.1 | BEIGE/BEACH-RELATED |
| CAI8037972.1 | BEIGE/BEACH-RELATED |
| CAI8037973.1 | BEIGE/BEACH-RELATED |
| CAI8037974.1 | BEIGE/BEACH-RELATED |
| CAI8037975.1 | |
| CAI8037977.1 | BEIGE/BEACH-RELATED |
| CAI8037976.1 | BEIGE/BEACH-RELATED |
| CAI8037978.1 | |
| CAI8037981.1 | PIRIN-RELATED |
| CAI8037980.1 | PIRIN-RELATED |
| CAI8037979.1 | PIRIN-RELATED |
| CAI8037982.1 | PIRIN-RELATED |
| CAI8037985.1 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
| CAI8037984.1 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
| CAI8037983.1 | |
| CAI8037986.1 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
| CAI8037987.1 | |
| CAI8037988.1 | |
| CAI8037989.1 | NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT |
| CAI8037990.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8037991.1 | 50S RIBOSOMAL PROTEIN L9 |
| CAI8037995.1 | PHD FINGER PROTEINS |
| CAI8037994.1 | PHD FINGER PROTEINS |
| CAI8037993.1 | |
| CAI8037992.1 | PHD FINGER PROTEINS |
| CAI8037996.1 | PHD FINGER PROTEINS |
| CAI8037997.1 | |
| CAI8037998.1 | PHD FINGER PROTEINS |
| CAI8037999.1 | |
| CAI8038000.1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| CAI8038001.1 | CALCIUM BINDING PROTEIN |
| CAI8038002.1 | CALCIUM BINDING PROTEIN |
| CAI8038003.1 | MYOSIN LIGHT CHAIN 1, 3 |
| CAI8038004.1 | CALCIUM BINDING PROTEIN |
| CAI8038005.1 | CALCIUM BINDING PROTEIN |
| CAI8038006.1 | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT |
| CAI8038007.1 | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT |
| CAI8038008.1 | RRNA METHYLASE-LIKE |
| CAI8038010.1 | UNCHARACTERIZED |
| CAI8038009.1 | UNCHARACTERIZED |
| CAI8038011.1 | PIRIN-RELATED |
| CAI8038013.1 | CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS |
| CAI8038016.1 | |
| CAI8038017.1 | |
| CAI8038014.1 | |
| CAI8038015.1 | CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS |
| CAI8038012.1 | |
| CAI8038018.1 | CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS |
| CAI8038019.1 | |
| CAI8038023.1 | MULTIPLE PDZ DOMAIN PROTEIN |
