Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037924.1 | PROTEIN SIDEKICK |
| CAI8037923.1 | PROTEIN SIDEKICK |
| CAI8037925.1 | PROTEIN SIDEKICK |
| CAI8037920.1 | PROTEIN SIDEKICK |
| CAI8037921.1 | PROTEIN SIDEKICK |
| CAI8037926.1 | |
| CAI8037927.1 | |
| CAI8037928.1 | |
| CAI8037929.1 | |
| CAI8037930.1 | |
| CAI8037931.1 | |
| CAI8037934.1 | |
| CAI8037933.1 | |
| CAI8037932.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8037935.1 | |
| CAI8037937.1 | |
| CAI8037938.1 | PAK1 INTERACTING PROTEIN 1 |
| CAI8037936.1 | PAK1 INTERACTING PROTEIN 1 |
| CAI8037939.1 | PAK1 INTERACTING PROTEIN 1 |
| CAI8037940.1 | PAK1 INTERACTING PROTEIN 1 |
| CAI8037944.1 | TRANSCRIPTION FACTOR CP2 |
| CAI8037943.1 | TRANSCRIPTION FACTOR CP2 |
| CAI8037942.1 | TRANSCRIPTION FACTOR CP2 |
| CAI8037941.1 | TRANSCRIPTION FACTOR CP2 |
| CAI8037945.1 | TRANSCRIPTION FACTOR CP2 |
| CAI8037946.1 | |
| CAI8037947.1 | |
| CAI8037949.1 | PHOSPHOMANNOMUTASE 45A |
| CAI8037948.1 | PHOSPHOMANNOMUTASE 45A |
| CAI8037951.1 | PHOSPHOMANNOMUTASE 45A |
| CAI8037950.1 | PHOSPHOMANNOMUTASE 45A |
| CAI8037952.1 | PHOSPHOMANNOMUTASE 45A |
| CAI8037955.1 | TRANSMEMBRANE PROTEIN HTP-1 RELATED |
| CAI8037953.1 | TRANSMEMBRANE PROTEIN HTP-1 RELATED |
| CAI8037954.1 | TRANSMEMBRANE PROTEIN HTP-1 RELATED |
| CAI8037957.1 | TRANSMEMBRANE PROTEIN HTP-1 RELATED |
| CAI8037956.1 | TRANSMEMBRANE PROTEIN HTP-1 RELATED |
| CAI8037962.1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| CAI8037961.1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| CAI8037963.1 | |
| CAI8037960.1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| CAI8037959.1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| CAI8037958.1 | |
| CAI8037964.1 | EF HAND DOMAIN FAMILY A1,A2-RELATED |
| CAI8037965.1 | LD08641P |
| CAI8037966.1 | LD08641P |
| CAI8037967.1 | LD08641P |
| CAI8037971.1 | BEIGE/BEACH-RELATED |
| CAI8037970.1 | BEIGE/BEACH-RELATED |
| CAI8037969.1 | BEIGE/BEACH-RELATED |
