Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037622.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037624.1 | CYTOKINE RECEPTOR |
| CAI8037623.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037621.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037625.1 | |
| CAI8037626.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8037627.1 | TENASCIN |
| CAI8037628.1 | |
| CAI8037629.1 | |
| CAI8037630.1 | PEROXISOMAL 2,4-DIENOYL-COA REDUCTASE |
| CAI8037631.1 | |
| CAI8037632.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8037633.1 | SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA |
| CAI8037634.1 | INNER MEMBRANE ABC TRANSPORTER PERMEASE PROTEIN YDCV |
| CAI8037635.1 | THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED |
| CAI8037636.1 | THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATED |
| CAI8037637.1 | FERRITIN |
| CAI8037638.1 | NAD(P)H NITROREDUCTASE YDJA-RELATED |
| CAI8037639.1 | LEUCINE-RESPONSIVE REGULATORY PROTEIN |
| CAI8037640.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8037641.1 | MOXR FAMILY PROTEIN |
| CAI8037642.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8037643.1 | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| CAI8037644.1 | INTEGRAL MEMBRANE EFFLUX PROTEIN-RELATED |
| CAI8037645.1 | GH17980P-RELATED |
| CAI8037646.1 | IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATED |
| CAI8037647.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8037648.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8037649.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8037650.1 | SORBITOL DEHYDROGENASE |
| CAI8037651.1 | PTERIN-4-ALPHA-CARBINOLAMINE DEHYDRATASE-RELATED |
| CAI8037652.1 | GERANYLGERANYL DIPHOSPHATE REDUCTASE |
| CAI8037653.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8037654.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8037655.1 | REGULATOR OF SIGMA-E PROTEASE RSEP |
| CAI8037656.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
| CAI8037657.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8037658.1 | RIBOSOME RECYCLING FACTOR |
| CAI8037659.1 | URIDYLATE KINASE |
| CAI8037660.1 | ELONGATION FACTOR TS |
| CAI8037662.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8037661.1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
| CAI8037663.1 | |
| CAI8037664.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8037665.1 | PHOSPHONATES-BINDING PERIPLASMIC PROTEIN |
| CAI8037666.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8037667.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI8037668.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8037669.1 | |
| CAI8037670.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G11590) |
