Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037371.1 | MORTALITY FACTOR 4-LIKE PROTEIN |
| CAI8037372.1 | |
| CAI8037373.1 | |
| CAI8037374.1 | |
| CAI8037375.1 | |
| CAI8037376.1 | |
| CAI8037377.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8037378.1 | OS01G0149700 PROTEIN |
| CAI8037379.1 | POLYGALACTURONASE INHIBITOR 1 |
| CAI8037380.1 | |
| CAI8037381.1 | |
| CAI8037382.1 | |
| CAI8037383.1 | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED |
| CAI8037384.1 | |
| CAI8037385.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| CAI8037386.1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| CAI8037387.1 | |
| CAI8037389.1 | |
| CAI8037388.1 | |
| CAI8037390.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8037391.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8037392.1 | |
| CAI8037394.1 | |
| CAI8037393.1 | |
| CAI8037395.1 | ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN |
| CAI8037396.1 | |
| CAI8037397.1 | |
| CAI8037398.1 | |
| CAI8037399.1 | |
| CAI8037400.1 | |
| CAI8037401.1 | |
| CAI8037402.1 | |
| CAI8037404.1 | |
| CAI8037403.1 | |
| CAI8037405.1 | |
| CAI8037406.1 | |
| CAI8037408.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| CAI8037407.1 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| CAI8037409.1 | SYNTAXIN |
| CAI8037410.1 | CATION TRANSPORT PROTEIN CHAC-RELATED |
| CAI8037411.1 | |
| CAI8037413.1 | |
| CAI8037414.1 | ARV1 |
| CAI8037412.1 | ARV1 |
| CAI8037415.1 | PHP DOMAIN PROTEIN |
| CAI8037416.1 | |
| CAI8037419.1 | OS10G0105400 PROTEIN |
| CAI8037418.1 | OS10G0105400 PROTEIN |
| CAI8037417.1 | OS10G0105400 PROTEIN |
| CAI8037422.1 | DNA2/NAM7 HELICASE FAMILY |
