Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037222.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037221.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037223.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037224.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8037226.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
| CAI8037225.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
| CAI8037227.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 13B |
| CAI8037228.1 | |
| CAI8037230.1 | VWFC DOMAIN-CONTAINING PROTEIN |
| CAI8037229.1 | GPALPP MOTIFS-CONTAINING PROTEIN 1 |
| CAI8037231.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8037234.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
| CAI8037235.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
| CAI8037233.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
| CAI8037232.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
| CAI8037237.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
| CAI8037236.1 | |
| CAI8037238.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
| CAI8037239.1 | GLYCOSYLTRANSFERASE |
| CAI8037240.1 | GLYCOSYLTRANSFERASE |
| CAI8037241.1 | GLYCOSYLTRANSFERASE |
| CAI8037242.1 | |
| CAI8037243.1 | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 |
| CAI8037244.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8037245.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037246.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037247.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037249.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037250.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037248.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037251.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037252.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037253.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8037254.1 | |
| CAI8037255.1 | |
| CAI8037256.1 | |
| CAI8037257.1 | |
| CAI8037258.1 | |
| CAI8037259.1 | |
| CAI8037260.1 | |
| CAI8037261.1 | |
| CAI8037263.1 | |
| CAI8037262.1 | CYTOKINE RECEPTOR |
| CAI8037264.1 | |
| CAI8037265.1 | |
| CAI8037266.1 | |
| CAI8037267.1 | |
| CAI8037268.1 | |
| CAI8037269.1 | CYTOKINE RECEPTOR |
| CAI8037270.1 | CYTOKINE RECEPTOR |
