Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8037020.1 | MOLTING PROTEIN MLT-4 |
| CAI8037022.1 | MOLTING PROTEIN MLT-4 |
| CAI8037023.1 | |
| CAI8037024.1 | |
| CAI8037025.1 | |
| CAI8037026.1 | |
| CAI8037027.1 | |
| CAI8037029.1 | UNCHARACTERIZED |
| CAI8037028.1 | ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 |
| CAI8037030.1 | |
| CAI8037032.1 | |
| CAI8037031.1 | |
| CAI8037033.1 | |
| CAI8037035.1 | HISTONE H2B |
| CAI8037034.1 | HISTONE H2B |
| CAI8037037.1 | HISTONE H2A |
| CAI8037036.1 | HISTONE H2A |
| CAI8037038.1 | HISTONE H2A |
| CAI8037040.1 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| CAI8037039.1 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| CAI8037041.1 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| CAI8037042.1 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| CAI8037044.1 | |
| CAI8037043.1 | SCAVENGER RECEPTOR CLASS F |
| CAI8037045.1 | SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F |
| CAI8037048.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 |
| CAI8037047.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 |
| CAI8037046.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 |
| CAI8037049.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8037051.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| CAI8037050.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| CAI8037052.1 | SOLUTE CARRIER FAMILY 35 MEMBER B |
| CAI8037053.1 | |
| CAI8037054.1 | SOLUTE CARRIER FAMILY 35 MEMBER B |
| CAI8037057.1 | CELL DIVISION PROTEIN KINASE |
| CAI8037058.1 | CELL DIVISION PROTEIN KINASE |
| CAI8037056.1 | CELL DIVISION PROTEIN KINASE |
| CAI8037055.1 | CELL DIVISION PROTEIN KINASE |
| CAI8037059.1 | |
| CAI8037065.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037064.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037063.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037062.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037061.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037060.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037066.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037067.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037068.1 | CARNITINE O-ACYLTRANSFERASE |
| CAI8037069.1 | |
| CAI8037070.1 |
