Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036922.1 | ABC TRANSPORTER B FAMILY |
| CAI8036923.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8036919.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8036924.1 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
| CAI8036925.1 | |
| CAI8036926.1 | |
| CAI8036927.1 | BCL-2 RELATED |
| CAI8036928.1 | BCL-2 RELATED |
| CAI8036930.1 | UNCHARACTERIZED |
| CAI8036929.1 | UNCHARACTERIZED |
| CAI8036934.1 | |
| CAI8036937.1 | |
| CAI8036936.1 | |
| CAI8036935.1 | |
| CAI8036933.1 | |
| CAI8036932.1 | |
| CAI8036931.1 | |
| CAI8036938.1 | |
| CAI8036939.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8036941.1 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
| CAI8036940.1 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
| CAI8036942.1 | SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED |
| CAI8036943.1 | |
| CAI8036944.1 | |
| CAI8036945.1 | CENTROMERE PROTEIN K |
| CAI8036949.1 | UNCHARACTERIZED |
| CAI8036948.1 | UNCHARACTERIZED |
| CAI8036947.1 | UNCHARACTERIZED |
| CAI8036946.1 | UNCHARACTERIZED |
| CAI8036950.1 | UNCHARACTERIZED |
| CAI8036951.1 | |
| CAI8036953.1 | |
| CAI8036952.1 | |
| CAI8036954.1 | |
| CAI8036955.1 | IMIDAZOLONEPROPIONASE |
| CAI8036956.1 | IMIDAZOLONEPROPIONASE |
| CAI8036957.1 | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 |
| CAI8036958.1 | TRNA-DIHYDROURIDINE SYNTHASE |
| CAI8036959.1 | |
| CAI8036960.1 | TRNA-DIHYDROURIDINE SYNTHASE |
| CAI8036963.1 | GTP-BINDING PROTEIN-RELATED |
| CAI8036962.1 | GTP-BINDING PROTEIN-RELATED |
| CAI8036961.1 | GTP-BINDING PROTEIN-RELATED |
| CAI8036964.1 | |
| CAI8036966.1 | SULFOQUINOVOSIDASE |
| CAI8036965.1 | SULFOQUINOVOSIDASE |
| CAI8036967.1 | SULFOQUINOVOSIDASE |
| CAI8036968.1 | SULFOQUINOVOSIDASE |
| CAI8036971.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 115 |
| CAI8036970.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 115 |
