Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036671.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8036672.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8036673.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8036670.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8036675.1 | |
| CAI8036676.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8036677.1 | |
| CAI8036678.1 | |
| CAI8036680.1 | |
| CAI8036679.1 | |
| CAI8036681.1 | |
| CAI8036682.1 | |
| CAI8036683.1 | |
| CAI8036684.1 | |
| CAI8036685.1 | |
| CAI8036686.1 | |
| CAI8036688.1 | |
| CAI8036687.1 | |
| CAI8036689.1 | |
| CAI8036690.1 | |
| CAI8036691.1 | ENDONUCLEASE-RELATED |
| CAI8036694.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8036693.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8036692.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8036695.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8036696.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8036697.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8036698.1 | RIBOSOMAL PROTEIN S7 |
| CAI8036699.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8036700.1 | ELONGATION FACTOR TU-RELATED |
| CAI8036701.1 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER |
| CAI8036702.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8036703.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8036704.1 | RIBOSOMAL PROTEIN L2 |
| CAI8036705.1 | |
| CAI8036706.1 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER |
| CAI8036707.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8036708.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8036709.1 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| CAI8036710.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8036711.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN L24 |
| CAI8036712.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8036713.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8036714.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8036715.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI8036716.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8036717.1 | 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 |
| CAI8036718.1 | 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 |
| CAI8036719.1 | 30S 40S RIBOSOMAL PROTEIN |
| CAI8036720.1 |
