Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8036521.1 | 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE |
| CAI8036522.1 | RIBONUCLEASE Y |
| CAI8036523.1 | MONOACYLGLYCEROL LIPASE |
| CAI8036524.1 | FE(2+)/MN(2+) TRANSPORTER PCL1 |
| CAI8036525.1 | NIPSNAP-RELATED |
| CAI8036526.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI8036527.1 | METAL-SULFUR CLUSTER BIOSYNTHESIS PROTEINS YUAD-RELATED |
| CAI8036528.1 | |
| CAI8036529.1 | SIGNAL TRANSDUCTION PROTEIN TRAP |
| CAI8036530.1 | |
| CAI8036531.1 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| CAI8036532.1 | LSM1 |
| CAI8036533.1 | ADP RIBOSYLATION FACTOR-RELATED |
| CAI8036535.1 | CEREBLON |
| CAI8036536.1 | |
| CAI8036534.1 | |
| CAI8036537.1 | |
| CAI8036538.1 | |
| CAI8036539.1 | |
| CAI8036540.1 | |
| CAI8036542.1 | |
| CAI8036541.1 | |
| CAI8036544.1 | |
| CAI8036543.1 | |
| CAI8036546.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8036548.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8036547.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8036545.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8036549.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8036551.1 | |
| CAI8036550.1 | |
| CAI8036552.1 | |
| CAI8036553.1 | |
| CAI8036556.1 | DOMON DOMAIN-CONTAINING PROTEIN FRRS1L |
| CAI8036558.1 | DOMON DOMAIN-CONTAINING PROTEIN FRRS1L |
| CAI8036557.1 | DOMON DOMAIN-CONTAINING PROTEIN FRRS1L |
| CAI8036555.1 | DOMON DOMAIN-CONTAINING PROTEIN FRRS1L |
| CAI8036554.1 | |
| CAI8036559.1 | DOMON DOMAIN-CONTAINING PROTEIN FRRS1L |
| CAI8036560.1 | |
| CAI8036561.1 | |
| CAI8036563.1 | |
| CAI8036562.1 | |
| CAI8036564.1 | |
| CAI8036565.1 | |
| CAI8036566.1 | |
| CAI8036567.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8036569.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8036568.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8036570.1 | PROMININ PROM PROTEIN |
